Publications

all Publications


Ogura, T., Goeschl, C., Filiault, D., Mirea, M., Slovak, R., Wolhrab, B., Satbhai, S.B., Busch, W. Root System Depth in Arabidopsis Is Shaped by EXOCYST70A3 via the Dynamic Modulation of Auxin Transport. (2019) Cell. 178(2):400-412.e16. DOI: 10.1016/j.cell.2019.06.021

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Di Mambro, R., Svolacchia, N., Dello Ioio, R., Pierdonati, E., Salvi, E., Pedrazzini, E., Vitale, A., Perilli, S., Sozzani, R., Benfey, P.N., Busch, W., Costantino, P., Sabatini, S. The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size. (2019) Current Biology. DOI: 10.1016/j.cub.2019.02.022

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Xu, Y.C., Niu, X.M., Li, X.X., He, W., Chen, J.F., Zou, Y.P., Wu, Q., Zhang, Y.E., Busch, W., Guo, Y.L. Adaptation and phenotypic diversification through loss-of-function mutations in Arabidopsis protein-coding genes. (2019) Plant Cell. DOI: 10.1105/tpc.18.00791

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Toal, T.W., Ron, M., Gibson, D., Kajala, K., Splitt, B., Johnson, L.S., Miller, N.D., Slovak, R., Gaudinier, A., Patel, R., de Lucas, M., Provart, N.J., Spalding, E.P., Busch, W., Kliebenstein, D.J., Brady, S.M. Regulation of Root Angle and Gravitropism. (2018) G3. DOI: 10.1534/g3.118.200540

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Smakowska-Luzan, E., Mott, G.A., Parys, K., Stegmann, M., Howton, T.C., Layeghifard, M., Neuhold, J., Lehner, A., Kong, J., Grünwald, K., Weinberger, N., Satbhai, S.B., Mayer, D., Busch, W., Madalinski, M., Stolt-Bergner, P., Provart, N.J., Mukhtar, M.S., Zipfel, C., Desveaux, D., Guttman, D.S., Belkhadir, Y. Publisher Correction: An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. (2018) Nature. DOI: 10.1038/s41586-018-0268-y

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Ristova, D., Giovannetti, M., Metesch, K., Busch, W. Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis. (2018) Plant Journal. DOI: 10.1111/tpj.14034

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Bouain, N., Satbhai, S.B., Korte, A., Saenchai, C., Desbrosses, G., Berthomieu, P., Busch, W., Rouached, H. Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition. (2018) PLOS Genetics. 14(4):e1007304. DOI: 10.1371/journal.pgen.1007304

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Mabuchi, K., Maki, H., Itaya, T., Suzuki, T., Nomoto, M., Sakaoka, S., Morikami, A., Higashiyama, T., Tada, Y., Busch, W., Tsukagoshi, H. MYB30 links ROS signaling, root cell elongation, and plant immune responses. (2018) Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1804233115

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Exposito-Alonso, M., Becker, C., Schuenemann, V.J., Reiter, E., Setzer, C., Slovak, R., Brachi, B., Hagmann, J., Grimm, D.G., Chen, J., Busch, W., Bergelson, J., Ness, R.W., Krause, J., Burbano, H.A., Weigel, D. The rate and potential relevance of new mutations in a colonizing plant lineage. (2018) PLOS Genetics. 14(2):e1007155. DOI: 10.1371/journal.pgen.1007155

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Shibata, M., Breuer, C., Kawamura, A., Clark, N.M., Rymen, B., Braidwood, L., Morohashi, K., Busch, W., Benfey, P.N., Sozzani, R., Sugimoto, K. GTL1 and DF1 regulate root hair growth through transcriptional repression ofin. (2018) Development. 145(3). DOI: 10.1242/dev.159707

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Kisko, M., Bouain, N., Safi, A., Medici, A., Akkers, R.C., Secco, D., Fouret, G., Krouk, G., Aarts, M.G., Busch, W., Rouached, H. LPCAT1 controls phosphate homeostasis in a zinc-dependent manner. (2018) Elife. 7. DOI: 10.7554/eLife.32077

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Smakowska-Luzan, E., Mott, G.A., Parys, K., Stegmann, M., Howton, T.C., Layeghifard, M., Neuhold, J., Lehner, A., Kong, J., Grünwald, K., Weinberger, N., Satbhai, S.B., Mayer, D., Busch, W., Madalinski, M., Stolt-Bergner, P., Provart, N.J., Mukhtar, M.S., Zipfel, C., Desveaux, D., Guttman, D.S., Belkhadir, Y. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. (2018) Nature. DOI: 10.1038/nature25184

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Friesner, J., Assmann, S.M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., Buell, C.R., Bucksch, A., Busch, W., Demura, T., Dinneny, J.R., Doherty, C.J., Eveland, A.L., Falter-Braun, P., Gehan, M.A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R.J.C., Megraw, M., Meyers, B.C., Murray, J.A.H., Provart, N.J., Rhee, S., Smith, R., Spalding, E.P., Taylor, C., Teal, T.K., Torii, K.U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., Brady, S.M. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. (2017) Plant Physiology. 175(4):1499-1509. DOI: 10.1104/pp.17.01490


Munch, D., Gupta, V., Mun, T., Bachmann, A., Busch, W., Kelly, S., Andersen, S.U. The Brassicaceae family displays divergent, shoot-skewed NLR resistance gene expression. (2017) Plant Physiology. DOI: 10.1104/pp.17.01606

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Di Mambro, R., De Ruvo, M., Pacifici, E., Salvi, E., Sozzani, R., Benfey, P.N., Busch, W., Novak, O., Ljung, K., Di Paola, L., Marée, A.F.M., Costantino, P., Grieneisen, V.A., Sabatini, S. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root. (2017) Proceedings of the National Academy of Sciences of the United States of America. 114(36):E7641-E7649. DOI: 10.1073/pnas.1705833114

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Bouain, N., Satbhai, S.B., Saenchai, C., Desbrosses, G., Berthomieu, P., Busch, W., Rouached, H. Zinc availability modulates plant growth and immune responses via AZI1 (2017) bioRxiv. DOI: https://doi.org/10.1101/166645

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Barbez, E., Dünser, K., Gaidora, A., Lendl, T., Busch, W. Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana. (2017) Proceedings of the National Academy of Sciences of the United States of America. 114(24):E4884-E4893. DOI: 10.1073/pnas.1613499114

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Satbhai, S.B., Setzer, C., Freynschlag, F., Slovak, R., Kerdaffrec, E., Busch, W. Natural allelic variation of FRO2 modulates Arabidopsis root growth under iron deficiency. (2017) Nature Communications. 8:15603. DOI: 10.1038/ncomms15603

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Vad, V., Cedrim, D., Busch, W., Filzmoser, P., Viola, I. Generalized box-plot for root growth ensembles. (2017) BMC Bioinformatics. 18(Suppl 2):65. DOI: 10.1186/s12859-016-1445-3

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Stoeva, D., Göschl, C., Corliss, B., Busch, W. Long-Term Confocal Imaging of Arabidopsis thaliana Roots for Simultaneous Quantification of Root Growth and Fluorescent Signals. (2017) Methods in Molecular Biology. 1610:169-183. DOI: 10.1007/978-1-4939-7003-2_12

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Giovannetti, M., Małolepszy, A., Göschl, C., Busch, W. Large-Scale Phenotyping of Root Traits in the Model Legume Lotus japonicus. (2017) Methods in Molecular Biology. 1610:155-167. DOI: 10.1007/978-1-4939-7003-2_11

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Satbhai, S.B., Göschl, C., Busch, W. Automated High-Throughput Root Phenotyping of Arabidopsis thaliana Under Nutrient Deficiency Conditions. (2017) Methods in Molecular Biology. 1610:135-153. DOI: 10.1007/978-1-4939-7003-2_10

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Ristova, D., Busch, W. Genome-Wide Association Mapping of Root Traits in the Context of Plant Hormone Research. (2017) Methods in Molecular Biology. 1497:47-55. DOI: 10.1007/978-1-4939-6469-7_6

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Klasen, J.R., Barbez, E., Meier, L., Meinshausen, N., Bühlmann, P., Koornneef, M., Busch, W., Schneeberger, K. A multi-marker association method for genome-wide association studies without the need for population structure correction. (2016) Nature Communications. 7:13299. DOI: 10.1038/ncomms13299

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Ristova, D., Carré, C., Pervent, M., Medici, A., Kim, G.J., Scalia, D., Ruffel, S., Birnbaum, K.D., Lacombe, B., Busch, W., Coruzzi, G.M., Krouk, G. Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root. (2016) Science Signaling. 9(451):rs13. DOI: 10.1126/scisignal.aaf2768

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Ogura, T., Busch, W. Genotypes, Networks, Phenotypes: Moving Toward Plant Systems Genetics. (2016) Annual Review of Cell and Developmental Biology. 32:103-126. DOI: 10.1146/annurev-cellbio-111315-124922

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Smakowska, E., Kong, J., Busch, W., Belkhadir, Y. Organ-specific regulation of growth-defense tradeoffs by plants. (2016) Current Opinion in Plant Biology. 29:129-37. DOI: 10.1016/j.pbi.2015.12.005

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Slovak, R., Ogura, T., Satbhai, S.B., Ristova, D., Busch, W. Genetic control of root growth: from genes to networks. (2016) Ann. Bot. 117(1):9-24. DOI: 10.1093/aob/mcv160

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Busch, W., Augustin, M., Haxhimusa, Y., Kropatsch, W. A framework for the extraction of quantitative traits from 2D images of mature Arabidopsis thaliana (2016) Machine Vision and Applications. 5(27).

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Brady, S.M., Burow, M., Busch, W., Carlborg, .., Denby, K.J., Glazebrook, J., Hamilton, E.S., Harmer, S.L., Haswell, E.S., Maloof, J.N., Springer, N.M., Kliebenstein, D.J. Reassess the t Test: Interact with All Your Data via ANOVA. (2015) Plant Cell. 27(8):2088-94. DOI: 10.1105/tpc.15.00238

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Augustin, M., Haxhimusa, Y., Busch, W., Kropatsch, W. Image-Based Phenotyping of the Mature Arabidopsis Shoot System (2015) European Conference on Computer Vision. DOI: https://doi.org/10.1007/978-3-319-16220-1_17


Janusch, I., Kropatsch, W.G., Busch, W., Ristova, D. Representing Roots on the Basis of Reeb Graphs in Plant Phenotyping (2015) Computer Vision – ECCV 2014 Workshops. ECCV 2014. Lecture Notes in Computer Science, vol 8928. DOI: https://doi.org/10.1007/978-3-319-16220-1_6


Satbhai, S.B., Ristova, D., Busch, W. Underground tuning: quantitative regulation of root growth. (2015) J. Exp. Bot. 66(4):1099-112. DOI: 10.1093/jxb/eru529

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Ogura, T., Busch, W. From phenotypes to causal sequences: using genome wide association studies to dissect the sequence basis for variation of plant development. (2015) Current Opinion in Plant Biology. 23:98-108. DOI: 10.1016/j.pbi.2014.11.008

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Slovak, R., Göschl, C., Seren, .., Busch, W. Genome-wide association mapping in plants exemplified for root growth in Arabidopsis thaliana. (2015) Methods in Molecular Biology. 1284:343-57. DOI: 10.1007/978-1-4939-2444-8_17

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Ristova, D., Busch, W. Natural variation of root traits: from development to nutrient uptake. (2014) Plant Physiology. 166(2):518-27. DOI: 10.1104/pp.114.244749

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Janusch, I., Kropatsch, W., Busch, W. Topological Image Analysis and (Normalised) Representations for Plant Phenotyping (2014) 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing. DOI: 10.1109/SYNASC.2014.83

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Slovak, R., Göschl, C., Su, X., Shimotani, K., Shiina, T., Busch, W. A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis. (2014) Plant Cell. 26(6):2390-2403. DOI: 10.1105/tpc.114.124032

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Sozzani, R., Busch, W., Spalding, E.P., Benfey, P.N. Advanced imaging techniques for the study of plant growth and development. (2014) Trends in Plant Science. 19(5):304-10. DOI: 10.1016/j.tplants.2013.12.003

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Schuster, C., Gaillochet, C., Medzihradszky, A., Busch, W., Daum, G., Krebs, M., Kehle, A., Lohmann, J.U. A regulatory framework for shoot stem cell control integrating metabolic, transcriptional, and phytohormone signals. (2014) Developmental Cell. 28(4):438-49. DOI: 10.1016/j.devcel.2014.01.013

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Meijón, M., Satbhai, S.B., Tsuchimatsu, T., Busch, W. Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis. (2014) Nature Genetics. 46(1):77-81. DOI: 10.1038/ng.2824

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Ischebeck, T., Werner, S., Krishnamoorthy, P., Lerche, J., Meijón, M., Stenzel, I., Löfke, C., Wiessner, T., Im, Y.J., Perera, I.Y., Iven, T., Feussner, I., Busch, W., Boss, W.F., Teichmann, T., Hause, B., Persson, S., Heilmann, I. Phosphatidylinositol 4,5-bisphosphate influences PIN polarization by controlling clathrin-mediated membrane trafficking in Arabidopsis. (2013) Plant Cell. 25(12):4894-911. DOI: 10.1105/tpc.113.116582

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Kaufmann, K., Busch, W. Plant genomics: from weed to wheat. (2013) Genome Biology. 14(6):308. DOI: 10.1186/gb-2013-14-6-308

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Busch, W., Moore, B.T., Martsberger, B., Mace, D.L., Twigg, R.W., Jung, J., Pruteanu-Malinici, I., Kennedy, S.J., Fricke, G.K., Clark, R.L., Ohler, U., Benfey, P.N. A microfluidic device and computational platform for high-throughput live imaging of gene expression. (2012) Nature Methods. 9(11):1101-6. DOI: 10.1038/nmeth.2185

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Iyer-Pascuzzi, A.S., Jackson, T., Cui, H., Petricka, J.J., Busch, W., Tsukagoshi, H., Benfey, P.N. Cell identity regulators link development and stress responses in the Arabidopsis root. (2011) Developmental Cell. 21(4):770-82. DOI: 10.1016/j.devcel.2011.09.009

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Tsukagoshi, H., Busch, W., Benfey, P.N. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. (2010) Cell. 143(4):606-16. DOI: 10.1016/j.cell.2010.10.020

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Long, T.A., Tsukagoshi, H., Busch, W., Lahner, B., Salt, D.E., Benfey, P.N. The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. (2010) Plant Cell. 22(7):2219-36. DOI: 10.1105/tpc.110.074096

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Sozzani, R., Cui, H., Moreno-Risueno, M.A., Busch, W., Van Norman, J.M., Vernoux, T., Brady, S.M., Dewitte, W., Murray, J.A., Benfey, P.N. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. (2010) Nature. 466(7302):128-32. DOI: 10.1038/nature09143

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Busch, W., Miotk, A., Ariel, F.D., Zhao, Z., Forner, J., Daum, G., Suzaki, T., Schuster, C., Schultheiss, S.J., Leibfried, A., Haubeiss, S., Ha, N., Chan, R.L., Lohmann, J.U. Transcriptional control of a plant stem cell niche. (2010) Developmental Cell. 18(5):849-61. DOI: 10.1016/j.devcel.2010.03.012

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Busch, W., Benfey, P.N. Information processing without brains–the power of intercellular regulators in plants. (2010) Development. 137(8):1215-26. DOI: 10.1242/dev.034868

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Moreno-Risueno, M.A., Busch, W., Benfey, P.N. Omics meet networks – using systems approaches to infer regulatory networks in plants. (2010) Current Opinion in Plant Biology. 13(2):126-31. DOI: 10.1016/j.pbi.2009.11.005

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Schultheiss, S.J., Busch, W., Lohmann, J.U., Kohlbacher, O., Rätsch, G. KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. (2009) Bioinformatics. 25(16):2126-33. DOI: 10.1093/bioinformatics/btp278

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Kumar, M., Busch, W., Birke, H., Kemmerling, B., Nürnberger, T., Schöffl, F. Heat shock factors HsfB1 and HsfB2b are involved in the regulation of Pdf1.2 expression and pathogen resistance in Arabidopsis. (2009) Molecular Plant. 2(1):152-65. DOI: 10.1093/mp/ssn095

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Fulton, L., Batoux, M., Vaddepalli, P., Yadav, R.K., Busch, W., Andersen, S.U., Jeong, S., Lohmann, J.U., Schneitz, K. DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana. (2009) PLOS Genetics. 5(1):e1000355. DOI: 10.1371/journal.pgen.1000355

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Skirycz, A., Radziejwoski, A., Busch, W., Hannah, M.A., Czeszejko, J., Kwaśniewski, M., Zanor, M.I., Lohmann, J.U., De Veylder, L., Witt, I., Mueller-Roeber, B. The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. (2008) Plant Journal. 56(5):779-92. DOI: 10.1111/j.1365-313X.2008.03641.x

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Laubinger, S., Sachsenberg, T., Zeller, G., Busch, W., Lohmann, J.U., Rätsch, G., Weigel, D. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(25):8795-800. DOI: 10.1073/pnas.0802493105

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Andersen, S.U., Buechel, S., Zhao, Z., Ljung, K., Novák, O., Busch, W., Schuster, C., Lohmann, J.U. Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. (2008) Plant Cell. 20(1):88-100. DOI: 10.1105/tpc.107.054676

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Busch, W., Lohmann, J.U. Profiling a plant: expression analysis in Arabidopsis. (2007) Current Opinion in Plant Biology. 10(2):136-41. DOI: 10.1016/j.pbi.2007.01.002

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Levesque, M.P., Vernoux, T., Busch, W., Cui, H., Wang, J.Y., Blilou, I., Hassan, H., Nakajima, K., Matsumoto, N., Lohmann, J.U., Scheres, B., Benfey, P.N. Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. (2006) PLOS Biology. 4(5):e143. DOI: 10.1371/journal.pbio.0040143

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Leibfried, A., To, J.P., Busch, W., Stehling, S., Kehle, A., Demar, M., Kieber, J.J., Lohmann, J.U. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. (2005) Nature. 438(7071):1172-5. DOI: 10.1038/nature04270

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Wigge, P.A., Kim, M.C., Jaeger, K.E., Busch, W., Schmid, M., Lohmann, J.U., Weigel, D. Integration of spatial and temporal information during floral induction in Arabidopsis. (2005) Science. 309(5737):1056-9. DOI: 10.1126/science.1114358

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Busch, W., Wunderlich, M., Schöffl, F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. (2005) Plant Journal. 41(1):1-14. DOI: 10.1111/j.1365-313X.2004.02272.x

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Busch, W., Saier, M.H., . The IUBMB-endorsed transporter classification system. (2004) Mol. Biotechnol. 27(3):253-62.

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Pivetti, C.D., Yen, M.R., Miller, S., Busch, W., Tseng, Y.H., Booth, I.R., Saier, M.H. Two families of mechanosensitive channel proteins. (2003) Microbiol. Mol. Biol. Rev. 67(1):66-85, table of contents.

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Busch, W., Saier, M.H. The IUBMB-endorsed transporter classification system. (2003) Methods in Molecular Biology. 227:21-36. DOI: 10.1385/1-59259-387-9:21


Busch, W., Saier, M.H. The transporter classification (TC) system, 2002. (2002) Crit. Rev. Biochem. Mol. Biol. 37(5):287-337. DOI: 10.1080/10409230290771528

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