Publications

all Publications


Toal, T.W., Ron, M., Gibson, D., Kajala, K., Splitt, B., Johnson, L.S., Miller, N.D., Slovak, R., Gaudinier, A., Patel, R., de Lucas, M., Provart, N.J., Spalding, E.P., Busch, W., Kliebenstein, D.J., Brady, S.M. Regulation of Root Angle and Gravitropism. (2018) G3. DOI: 10.1534/g3.118.200540

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Smakowska-Luzan, E., Mott, G.A., Parys, K., Stegmann, M., Howton, T.C., Layeghifard, M., Neuhold, J., Lehner, A., Kong, J., Grünwald, K., Weinberger, N., Satbhai, S.B., Mayer, D., Busch, W., Madalinski, M., Stolt-Bergner, P., Provart, N.J., Mukhtar, M.S., Zipfel, C., Desveaux, D., Guttman, D.S., Belkhadir, Y. Publisher Correction: An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. (2018) Nature. DOI: 10.1038/s41586-018-0268-y

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Ristova, D., Giovannetti, M., Metesch, K., Busch, W. Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis. (2018) Plant J. DOI: 10.1111/tpj.14034

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Bouain, N., Satbhai, S.B., Korte, A., Saenchai, C., Desbrosses, G., Berthomieu, P., Busch, W., Rouached, H. Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition. (2018) PLoS Genet. 14(4):e1007304. DOI: 10.1371/journal.pgen.1007304

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Mabuchi, K., Maki, H., Itaya, T., Suzuki, T., Nomoto, M., Sakaoka, S., Morikami, A., Higashiyama, T., Tada, Y., Busch, W., Tsukagoshi, H. MYB30 links ROS signaling, root cell elongation, and plant immune responses. (2018) Proc. Natl. Acad. Sci. U.S.A. DOI: 10.1073/pnas.1804233115

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Exposito-Alonso, M., Becker, C., Schuenemann, V.J., Reiter, E., Setzer, C., Slovak, R., Brachi, B., Hagmann, J., Grimm, D.G., Chen, J., Busch, W., Bergelson, J., Ness, R.W., Krause, J., Burbano, H.A., Weigel, D. The rate and potential relevance of new mutations in a colonizing plant lineage. (2018) PLoS Genet. 14(2):e1007155. DOI: 10.1371/journal.pgen.1007155

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Shibata, M., Breuer, C., Kawamura, A., Clark, N.M., Rymen, B., Braidwood, L., Morohashi, K., Busch, W., Benfey, P.N., Sozzani, R., Sugimoto, K. GTL1 and DF1 regulate root hair growth through transcriptional repression ofin. (2018) Development. 145(3). DOI: 10.1242/dev.159707

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Kisko, M., Bouain, N., Safi, A., Medici, A., Akkers, R.C., Secco, D., Fouret, G., Krouk, G., Aarts, M.G., Busch, W., Rouached, H. LPCAT1 controls phosphate homeostasis in a zinc-dependent manner. (2018) Elife. 7. DOI: 10.7554/eLife.32077

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Smakowska-Luzan, E., Mott, G.A., Parys, K., Stegmann, M., Howton, T.C., Layeghifard, M., Neuhold, J., Lehner, A., Kong, J., Grünwald, K., Weinberger, N., Satbhai, S.B., Mayer, D., Busch, W., Madalinski, M., Stolt-Bergner, P., Provart, N.J., Mukhtar, M.S., Zipfel, C., Desveaux, D., Guttman, D.S., Belkhadir, Y. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. (2018) Nature. DOI: 10.1038/nature25184

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Friesner, J., Assmann, S.M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., Buell, C.R., Bucksch, A., Busch, W., Demura, T., Dinneny, J.R., Doherty, C.J., Eveland, A.L., Falter-Braun, P., Gehan, M.A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R.J.C., Megraw, M., Meyers, B.C., Murray, J.A.H., Provart, N.J., Rhee, S., Smith, R., Spalding, E.P., Taylor, C., Teal, T.K., Torii, K.U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., Brady, S.M. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. (2017) Plant Physiol. 175(4):1499-1509. DOI: 10.1104/pp.17.01490


Munch, D., Gupta, V., Mun, T., Bachmann, A., Busch, W., Kelly, S., Andersen, S.U. The Brassicaceae family displays divergent, shoot-skewed NLR resistance gene expression. (2017) Plant Physiol. DOI: 10.1104/pp.17.01606

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Di Mambro, R., De Ruvo, M., Pacifici, E., Salvi, E., Sozzani, R., Benfey, P.N., Busch, W., Novak, O., Ljung, K., Di Paola, L., Marée, A.F.M., Costantino, P., Grieneisen, V.A., Sabatini, S. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root. (2017) Proc. Natl. Acad. Sci. U.S.A. 114(36):E7641-E7649. DOI: 10.1073/pnas.1705833114

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Bouain, N., Satbhai, S.B., Saenchai, C., Desbrosses, G., Berthomieu, P., Busch, W., Rouached, H. Zinc availability modulates plant growth and immune responses via AZI1 (2017) bioRxiv. DOI: https://doi.org/10.1101/166645

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Barbez, E., Dünser, K., Gaidora, A., Lendl, T., Busch, W. Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana. (2017) Proc. Natl. Acad. Sci. U.S.A. 114(24):E4884-E4893. DOI: 10.1073/pnas.1613499114

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Satbhai, S.B., Setzer, C., Freynschlag, F., Slovak, R., Kerdaffrec, E., Busch, W. Natural allelic variation of FRO2 modulates Arabidopsis root growth under iron deficiency. (2017) Nat Commun. 8:15603. DOI: 10.1038/ncomms15603

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Vad, V., Cedrim, D., Busch, W., Filzmoser, P., Viola, I. Generalized box-plot for root growth ensembles. (2017) BMC Bioinformatics. 18(Suppl 2):65. DOI: 10.1186/s12859-016-1445-3

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Stoeva, D., Göschl, C., Corliss, B., Busch, W. Long-Term Confocal Imaging of Arabidopsis thaliana Roots for Simultaneous Quantification of Root Growth and Fluorescent Signals. (2017) Methods Mol. Biol. 1610:169-183. DOI: 10.1007/978-1-4939-7003-2_12

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Giovannetti, M., Małolepszy, A., Göschl, C., Busch, W. Large-Scale Phenotyping of Root Traits in the Model Legume Lotus japonicus. (2017) Methods Mol. Biol. 1610:155-167. DOI: 10.1007/978-1-4939-7003-2_11

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Satbhai, S.B., Göschl, C., Busch, W. Automated High-Throughput Root Phenotyping of Arabidopsis thaliana Under Nutrient Deficiency Conditions. (2017) Methods Mol. Biol. 1610:135-153. DOI: 10.1007/978-1-4939-7003-2_10

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Ristova, D., Busch, W. Genome-Wide Association Mapping of Root Traits in the Context of Plant Hormone Research. (2017) Methods Mol. Biol. 1497:47-55. DOI: 10.1007/978-1-4939-6469-7_6

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Klasen, J.R., Barbez, E., Meier, L., Meinshausen, N., Bühlmann, P., Koornneef, M., Busch, W., Schneeberger, K. A multi-marker association method for genome-wide association studies without the need for population structure correction. (2016) Nat Commun. 7:13299. DOI: 10.1038/ncomms13299

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Ristova, D., Carré, C., Pervent, M., Medici, A., Kim, G.J., Scalia, D., Ruffel, S., Birnbaum, K.D., Lacombe, B., Busch, W., Coruzzi, G.M., Krouk, G. Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root. (2016) Sci Signal. 9(451):rs13. DOI: 10.1126/scisignal.aaf2768

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Ogura, T., Busch, W. Genotypes, Networks, Phenotypes: Moving Toward Plant Systems Genetics. (2016) Annu. Rev. Cell Dev. Biol. 32:103-126. DOI: 10.1146/annurev-cellbio-111315-124922

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Smakowska, E., Kong, J., Busch, W., Belkhadir, Y. Organ-specific regulation of growth-defense tradeoffs by plants. (2016) Curr. Opin. Plant Biol. 29:129-37. DOI: 10.1016/j.pbi.2015.12.005

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Slovak, R., Ogura, T., Satbhai, S.B., Ristova, D., Busch, W. Genetic control of root growth: from genes to networks. (2016) Ann. Bot. 117(1):9-24. DOI: 10.1093/aob/mcv160

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Busch, W., Augustin, M., Haxhimusa, Y., Kropatsch, W. A framework for the extraction of quantitative traits from 2D images of mature Arabidopsis thaliana (2016) Machine Vision and Applications. 5(27).

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Brady, S.M., Burow, M., Busch, W., Carlborg, .., Denby, K.J., Glazebrook, J., Hamilton, E.S., Harmer, S.L., Haswell, E.S., Maloof, J.N., Springer, N.M., Kliebenstein, D.J. Reassess the t Test: Interact with All Your Data via ANOVA. (2015) Plant Cell. 27(8):2088-94. DOI: 10.1105/tpc.15.00238

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Augustin, M., Haxhimusa, Y., Busch, W., Kropatsch, W. Image-Based Phenotyping of the Mature Arabidopsis Shoot System (2015) European Conference on Computer Vision. DOI: https://doi.org/10.1007/978-3-319-16220-1_17


Janusch, I., Kropatsch, W.G., Busch, W., Ristova, D. Representing Roots on the Basis of Reeb Graphs in Plant Phenotyping (2015) Computer Vision – ECCV 2014 Workshops. ECCV 2014. Lecture Notes in Computer Science, vol 8928. DOI: https://doi.org/10.1007/978-3-319-16220-1_6


Satbhai, S.B., Ristova, D., Busch, W. Underground tuning: quantitative regulation of root growth. (2015) J. Exp. Bot. 66(4):1099-112. DOI: 10.1093/jxb/eru529

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Ogura, T., Busch, W. From phenotypes to causal sequences: using genome wide association studies to dissect the sequence basis for variation of plant development. (2015) Curr. Opin. Plant Biol. 23:98-108. DOI: 10.1016/j.pbi.2014.11.008

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Slovak, R., Göschl, C., Seren, .., Busch, W. Genome-wide association mapping in plants exemplified for root growth in Arabidopsis thaliana. (2015) Methods Mol. Biol. 1284:343-57. DOI: 10.1007/978-1-4939-2444-8_17

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Ristova, D., Busch, W. Natural variation of root traits: from development to nutrient uptake. (2014) Plant Physiol. 166(2):518-27. DOI: 10.1104/pp.114.244749

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Janusch, I., Kropatsch, W., Busch, W. Topological Image Analysis and (Normalised) Representations for Plant Phenotyping (2014) 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing. DOI: 10.1109/SYNASC.2014.83

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Slovak, R., Göschl, C., Su, X., Shimotani, K., Shiina, T., Busch, W. A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis. (2014) Plant Cell. 26(6):2390-2403. DOI: 10.1105/tpc.114.124032

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Sozzani, R., Busch, W., Spalding, E.P., Benfey, P.N. Advanced imaging techniques for the study of plant growth and development. (2014) Trends Plant Sci. 19(5):304-10. DOI: 10.1016/j.tplants.2013.12.003

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Schuster, C., Gaillochet, C., Medzihradszky, A., Busch, W., Daum, G., Krebs, M., Kehle, A., Lohmann, J.U. A regulatory framework for shoot stem cell control integrating metabolic, transcriptional, and phytohormone signals. (2014) Dev. Cell. 28(4):438-49. DOI: 10.1016/j.devcel.2014.01.013

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Meijón, M., Satbhai, S.B., Tsuchimatsu, T., Busch, W. Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis. (2014) Nat. Genet. 46(1):77-81. DOI: 10.1038/ng.2824

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Ischebeck, T., Werner, S., Krishnamoorthy, P., Lerche, J., Meijón, M., Stenzel, I., Löfke, C., Wiessner, T., Im, Y.J., Perera, I.Y., Iven, T., Feussner, I., Busch, W., Boss, W.F., Teichmann, T., Hause, B., Persson, S., Heilmann, I. Phosphatidylinositol 4,5-bisphosphate influences PIN polarization by controlling clathrin-mediated membrane trafficking in Arabidopsis. (2013) Plant Cell. 25(12):4894-911. DOI: 10.1105/tpc.113.116582

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Kaufmann, K., Busch, W. Plant genomics: from weed to wheat. (2013) Genome Biol. 14(6):308. DOI: 10.1186/gb-2013-14-6-308

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Busch, W., Moore, B.T., Martsberger, B., Mace, D.L., Twigg, R.W., Jung, J., Pruteanu-Malinici, I., Kennedy, S.J., Fricke, G.K., Clark, R.L., Ohler, U., Benfey, P.N. A microfluidic device and computational platform for high-throughput live imaging of gene expression. (2012) Nat. Methods. 9(11):1101-6. DOI: 10.1038/nmeth.2185

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Iyer-Pascuzzi, A.S., Jackson, T., Cui, H., Petricka, J.J., Busch, W., Tsukagoshi, H., Benfey, P.N. Cell identity regulators link development and stress responses in the Arabidopsis root. (2011) Dev. Cell. 21(4):770-82. DOI: 10.1016/j.devcel.2011.09.009

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Tsukagoshi, H., Busch, W., Benfey, P.N. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. (2010) Cell. 143(4):606-16. DOI: 10.1016/j.cell.2010.10.020

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Long, T.A., Tsukagoshi, H., Busch, W., Lahner, B., Salt, D.E., Benfey, P.N. The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. (2010) Plant Cell. 22(7):2219-36. DOI: 10.1105/tpc.110.074096

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Sozzani, R., Cui, H., Moreno-Risueno, M.A., Busch, W., Van Norman, J.M., Vernoux, T., Brady, S.M., Dewitte, W., Murray, J.A., Benfey, P.N. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. (2010) Nature. 466(7302):128-32. DOI: 10.1038/nature09143

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Busch, W., Miotk, A., Ariel, F.D., Zhao, Z., Forner, J., Daum, G., Suzaki, T., Schuster, C., Schultheiss, S.J., Leibfried, A., Haubeiss, S., Ha, N., Chan, R.L., Lohmann, J.U. Transcriptional control of a plant stem cell niche. (2010) Dev. Cell. 18(5):849-61. DOI: 10.1016/j.devcel.2010.03.012

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Busch, W., Benfey, P.N. Information processing without brains–the power of intercellular regulators in plants. (2010) Development. 137(8):1215-26. DOI: 10.1242/dev.034868

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Moreno-Risueno, M.A., Busch, W., Benfey, P.N. Omics meet networks – using systems approaches to infer regulatory networks in plants. (2010) Curr. Opin. Plant Biol. 13(2):126-31. DOI: 10.1016/j.pbi.2009.11.005

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Schultheiss, S.J., Busch, W., Lohmann, J.U., Kohlbacher, O., Rätsch, G. KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. (2009) Bioinformatics. 25(16):2126-33. DOI: 10.1093/bioinformatics/btp278

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Kumar, M., Busch, W., Birke, H., Kemmerling, B., Nürnberger, T., Schöffl, F. Heat shock factors HsfB1 and HsfB2b are involved in the regulation of Pdf1.2 expression and pathogen resistance in Arabidopsis. (2009) Mol Plant. 2(1):152-65. DOI: 10.1093/mp/ssn095

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Fulton, L., Batoux, M., Vaddepalli, P., Yadav, R.K., Busch, W., Andersen, S.U., Jeong, S., Lohmann, J.U., Schneitz, K. DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana. (2009) PLoS Genet. 5(1):e1000355. DOI: 10.1371/journal.pgen.1000355

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Skirycz, A., Radziejwoski, A., Busch, W., Hannah, M.A., Czeszejko, J., Kwaśniewski, M., Zanor, M.I., Lohmann, J.U., De Veylder, L., Witt, I., Mueller-Roeber, B. The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. (2008) Plant J. 56(5):779-92. DOI: 10.1111/j.1365-313X.2008.03641.x

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Laubinger, S., Sachsenberg, T., Zeller, G., Busch, W., Lohmann, J.U., Rätsch, G., Weigel, D. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. (2008) Proc. Natl. Acad. Sci. U.S.A. 105(25):8795-800. DOI: 10.1073/pnas.0802493105

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Andersen, S.U., Buechel, S., Zhao, Z., Ljung, K., Novák, O., Busch, W., Schuster, C., Lohmann, J.U. Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. (2008) Plant Cell. 20(1):88-100. DOI: 10.1105/tpc.107.054676

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Busch, W., Lohmann, J.U. Profiling a plant: expression analysis in Arabidopsis. (2007) Curr. Opin. Plant Biol. 10(2):136-41. DOI: 10.1016/j.pbi.2007.01.002

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Levesque, M.P., Vernoux, T., Busch, W., Cui, H., Wang, J.Y., Blilou, I., Hassan, H., Nakajima, K., Matsumoto, N., Lohmann, J.U., Scheres, B., Benfey, P.N. Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. (2006) PLoS Biol. 4(5):e143. DOI: 10.1371/journal.pbio.0040143

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Leibfried, A., To, J.P., Busch, W., Stehling, S., Kehle, A., Demar, M., Kieber, J.J., Lohmann, J.U. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. (2005) Nature. 438(7071):1172-5. DOI: 10.1038/nature04270

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Wigge, P.A., Kim, M.C., Jaeger, K.E., Busch, W., Schmid, M., Lohmann, J.U., Weigel, D. Integration of spatial and temporal information during floral induction in Arabidopsis. (2005) Science. 309(5737):1056-9. DOI: 10.1126/science.1114358

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Busch, W., Wunderlich, M., Schöffl, F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. (2005) Plant J. 41(1):1-14. DOI: 10.1111/j.1365-313X.2004.02272.x

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Busch, W., Saier, M.H., . The IUBMB-endorsed transporter classification system. (2004) Mol. Biotechnol. 27(3):253-62.

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Pivetti, C.D., Yen, M.R., Miller, S., Busch, W., Tseng, Y.H., Booth, I.R., Saier, M.H. Two families of mechanosensitive channel proteins. (2003) Microbiol. Mol. Biol. Rev. 67(1):66-85, table of contents.

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Busch, W., Saier, M.H. The IUBMB-endorsed transporter classification system. (2003) Methods Mol. Biol. 227:21-36. DOI: 10.1385/1-59259-387-9:21


Busch, W., Saier, M.H. The transporter classification (TC) system, 2002. (2002) Crit. Rev. Biochem. Mol. Biol. 37(5):287-337. DOI: 10.1080/10409230290771528

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